A novel genetic strategy to enable rapid detection of rare non-native alleles

R.D., Cooper, T.K., Luckau, E., Toffelmier, D.G., Cook, S. Martinelli, M.H., Fawcett & H.B., Shaffer

Published Work 2024 | Scientific Report (Vol. 14)

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A genome assembly for the Chryxus Arctic (Oeneis chryxus), the highest butterfly in North America

Z.G., MacDonald, S., Schoville, M., Escalona, M.P.A., Marimuthu, O., Nguyen, N., Chumchim, C.W., Fairbairn, W., Seligmann, E., Toffelmier, T., Gillespie, & H.B., Shaffer

Published Work 2024 | Journal of Heredity

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A reference genome assembly for the continentally distributed ring-necked snake, Diadophis punctatus

E.P. Westeen, M. Escalona, E. Beraut, M.P.A. Marimuthu, O. Nguyen, R.N. Fisher, E. Toffelmier, H.B. Shaffer, I.J. Wang

Published Work 2023 | Journal of Heredity, Volume 114, Issue 6

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A genome assembly of the Yuma myotis bat, Myotis yumanensis

J.N. Curti, D. Fraser, M. Escalona, C.W. Fairbairn, S. Sacco, R. Sahasrabudhe, O. Nguyen, W. Seligmann, P.H. Sudmant, E. Toffelmier, , J.M. Vazquez, R. Wayne, H.B. Shaffer, M.R. Buchalski

Published Work 2023 | Journal of Heredity

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A genome assembly for the southern Pacific rattlesnake, Crotalus oreganus helleri, in the western rattlesnake species complex

E.P. Westeen, M. Escalona, M.L. Holding, E. Beraut, C. Fairbairn, M.P.A. Marimuthu, O. Nguyen, R. Perri, R.N. Fisher, E. Toffelmier, H.B. Shaffer, I.J. Wang

Published Work 2023 | Journal of Heredity, Volume 114, Issue 6

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Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis

A.P. Bishop, E.P. Westeen, M.L. Yuan, M. Escalona, E. Beraut, C. Fairbairn, M.P.A Marimuthu, O. Nguyen, N. Chumchim, E. Toffelmier, R.N. Fisher, H.B. Shaffer, I.J. Wang

Published Work 2023 | Journal of Heredity, Volume 114, Issue 5

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Reference genome of an iconic lizard in western North America, Blainville’s horned lizard Phrynosoma blainvillii

J.Q. Richmond, J.A. McGuire, M. Escalona, M.P.A. Marimuthu, O. Nguyen, S. Sacco, E. Beraut, E. Toffelmier, R.N. Fisher, I.J. Wang, H.B. Shaffer

Published Work 2023 | Journal of Heredity, Volume 114, Issue 4

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Reference genome for the American rubyspot damselfly, Hetaerina americana

G.F. Grether, J. Beninde, E. Beraut, N. Chumchim, M. Escalona, Z.G. MacDonald, C. Miller, R. Sahasrabudhe, A.M. Shedlock, E. Toffelmier, H.B. Shaffer

Published Work 2023 | Journal of Heredity, Volume 114, Issue 4

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Reference genome of the black rail, Laterallus jamaicensis 

L.A. Hall, I.J. Wang, M. Escalona, E. Beraut, S. Sacco, R. Sahasrabudhe, O. Nguyen, E. Toffelmier, H.B. Shaffer, S.R. Beissinger

Published Work 2023 | Journal of Heredity, Volume 114, Issue 4

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Two transects reveal remarkable variation in gene flow on opposite ends of a European toad hybrid zone

I. van Riemsdijk, J.W. Arntzen, G.M. Bucciarelli, E. McCartney-Melstad, M. Rafajlovic, P.A. Scott, E. Toffelmier, H.B. Shaffer, B. Wielstra

Published Work 2023 | Heredity, Volume 131

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Reference genome of the Virginia rail, Rallus limicola 

L.A. Hall, I.J. Wang, M. Escalona, E. Beraut, S. Sacco, R. Sahasrabudhe, O. Nguyen, E. Toffelmier, H.B. Shaffer, S.R. Beissinger

Published Work 2023 | Journal of Heredity, Volume 114, Issue 4

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Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae)

S.A. Adams, N.R. Graham, A.J. Holmquist, M.M. Sheffer, E.C. Steigerwald, R. Sahasrabudhe, O. Nguyen, E. Beraut, C. Fairbairn, S. Sacco, W. Seligmann, M. Escalona, H.B. Shaffer, E. Toffelmier, R.G. Gillespie

Published Work 2023 | Journal of Heredity, Volume 114, Issue 4

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Seizing the moment: The opportunity and relevance of the California Conservation Genomics Project to state and federal conservation policy

P.L., Fiedler, B., Erickson, M., Esgro, M., Gold, J.M., Hull, J.M. Norris, B., Shapiro, M., Westphal, E., Toffelmier, and H.B., Shaffer

Published Work 2022 | Journal of Heredity, Volume 113, Issue 6, Pages 589–596

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Reference genome of the rubber boa, Charina bottae (Serpentes: Boidae)

J.L., Grismer, M., Escalona, C., Miller, E., Beraut, C.W., Fairbairn, M.P.A., Marimuthu, O., Nguyen, E., Toffelmier, I.J., Wang, and H.B., Shaffer

Published Work 2022 | Journal of Heredity, Volume 113, Issue 6, Pages 641–648

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The phylogeny of California, and how it informs setting multispecies conservation priorities

E., Toffelmier, J., Beninde, and H.B., Shaffer

Published Work 2022 | Journal of Heredity, Volume 113, Issue 6, pg. 597–603

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A brief history of population genetic research in California and an evaluation of its utility for conservation decision-making

J., Beninde, E., Toffelmier, and H.B., Shaffer

Published Work 2022 | Journal of Heredity, Volume 113, Issue 6, December 2022, Pages 604–614

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Reference Genome Assembly of the Big Berry Manzanita (Arctostaphylos glauca)

Y., Huang, M., Escalona, G., Morrison, M.P.A., Marimuthu, O., Nguyen, E., Toffelmier, H.B. Shaffer, and A., Litt

Published Work 2022 | Journal of Heredity, Volume 113, Issue 2, Pages 188–196

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Reference genome of the Monkeyface Prickleback, Cebidichthys violaceus

D.B., Wright, M., Escalona, M.P.A., Marimuthu, R., Sahasrabudhe, O., Nguyen, S., Sacco, E., Beraut, E., Toffelmier, C., Miller, H.B., Shaffer, G., Bernardi, and D.P., German

Published Work 2022 | Journal of Heredity

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Reference genome of the Woolly Sculpin, Clinocottus analis

D.B., Wright, M., Escalona, M.P.A., Marimuthu, R., Sahasrabudhe, O., Nguyen, S., Sacco, E., Beraut, E., Toffelmier, C., Miller, H.B., Shaffer, and G., Bernardi

Published Work 2022 | Journal of Heredity

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Reference genome of the color polymorphic desert annual plant sandblossoms, Linanthus parryae

I.G., Anghel, S.J., Jacobs, M., Escalona, M.P.A., Marimuthu, C.W., Fairbairn, E., Beraut, O., Nguyen, E., Toffelmier, H.B., Shaffer, and F., Zapata

Published Work 2022 | Journal of Heredity, Volume 113, Issue 6, December 2022, Pages 712–721

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Reference genome assembly of the sunburst anemone, Anthopleura sola

B.H., Cornwell, E., Beraut, C., Fairbairn, O., Nguyen, M.P.A., Marimuthu, M., Escalona, and E., Toffelmier.

Published Work 2022 | Journal of Heredity, Volume 113, Issue 6, Pages 699–705

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CaliPopGen: A genetic and life history database for the fauna and flora of California

J., Beninde, E.M., Toffelmier, A., Andreas, C., Nishioka, M., Slay, A., Soto, J.P., Bueno, G., Gonzalez, H.V., Pham, M., Posta, J.P., Pace, and H.B., Shaffer

Published Work 2022 | Scientific Data volume 9, Article number: 380 (2022)

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Reference Genome of the Northwestern Pond Turtle, Actinemys marmorata

B.D., Todd, T.S., Jenkinson, M., Escalona, E., Beraut, O., Nguyen, R., Sahasrabudhe, P.A., Scott, E., Toffelmier, I.J., Wang, and H.B., Shaffer

Published Work 2022 | Journal of Heredity, Volume 113, Issue 6, pg. 624–631

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Landscape Genomics to Enable Conservation Actions: The California Conservation Genomics Project

H.B., Shaffer, E., Toffelmier, R.B., Corbett-Detig, M., Escalona, B., Erickson, P., Fiedler, M., Gold, R.J., Harrigan, S., Hodges, T.K., Luckau, C., Miller, D.R., Oliveira, K.E., Shaffer, B., Shapiro, V.L., Sork, and I.J., Wang.

Published Work 2022 | Journal of Heredity, Volume 113, Issue 6, pg. 577–588

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Spatial variation in introgression along a toad hybrid zone in France

I. Van Riemsdijk, J.W. Arntzen, G.M. Bucciarelli, E. McCartney-Melstad, M. Rafajlovic, P.A. Scott, E. Toffelmier, H.B. Shaffer, B. Wielstra

Published Work 2020 | Heredity, Volume 131

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Rapid influenza A detection and quantitation in birds using a one-step real-time reverse transcriptase PCR and high resolution melting

Curd, E.; Pollinger, J.; Toffelmier, E.; Smith, T. B.

Published Work 2011 | Journal of Virological Methods 176, 125–130

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Nonspecific patterns of vector, host and avian malaria parasite associations in a Central African rainforest

Njabo, K. Y.; Cornel, A. J.; Bonneaud, C.; Toffelmier, E.; Sehgal, R. N.; Valkiunas, G.; Russell, A. F.; Smith, T. B.

Published Work 2010 | Molecular Ecology 20(5), 1049–1061

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