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luke browne

Conservation Genomics

One of the primary strengths of La Kretz Center researchers is the intersection of conservation biology and cutting-edge genomic science. We actively fund projects that bring together academics, resource and land policy professionals, and regulatory experts to optimally use the power of genomics in the conservation of California’s threatened and exploited species. In partnership with the UCLA Grand Challenges program, we have launched the California Conservation Genomics Project. In addition, we continue to fund researchers as they quantify the distribution of genetic variation that is critical for adaptation and species resilience in the face of climate change, habitat fragmentation, and other challenges faced by declining species.

PROJECTS

Monitoring of artificial reef restoration in Palos Verdes using eDNA

Awardee: Elijah Catalan, first year Ph.D. student at the Institute of Environment and Sustainability. Elijah's research intends to bring together genomic-based biodiversity monitoring, biogeochemistry, Indigenous tribal knowledge, and stewardship programs to understand the resilience of coastal and marine biodiversity to climate change and possibilities for adaptation on the West Coast.

environmental dna as a tool for assessing microbial diversity & ecological impacts by contaminants at the bowtie parcel brownfield site in southern california

Environmental DNA as a tool for assessing microbial diversity & ecological impacts by contaminants at The Bowtie parcel Brownfield site in Southern California

Awardee: Maura Palacios, Postdoctoral Scholar in the Wayne Lab. Maura's projects use eDNA to assess species assemblages in the Mojave Desert Springs, a threatened ecosystem and to explore microbial community changes in relation to hazardous materials at Brownfield sites throughout Southern California, for potential bioremediation practices.

dna meta-barcoding to inform management for parasite infecting endemic san miguel island foxes

DNA meta-barcoding to inform management for parasite infecting endemic San Miguel Island foxes

Awardees: Meixi Lin, second year Ph.D. student in the Wayne Lab, and Ana Garcia Vedrenne, Ph.D. in Ecology, Evolution and Marine Biology at UCSB. Ana is using DNA meta-barcoding to identify and quantify parasite and pathogen biodiversity in California ecosystems. Meixi is intrigued by how molecular biology tools could help resolve previously impossible wildlife conservation puzzles.

luke browne

Valley Oak Conservation in a Changing Climate

Rapidly changing climate in California and around the world has the potential to cause a mismatch between the environmental conditions that plants are adapted to and the environmental conditions they…

Publications

Total records: 37

Hybridization and endangered species protection in the molecular era

R.K. Wayne and H. B. Shaffer

Molecular Ecology 25:280-289, 2016.

Published Work, Permalink

Amphibian molecular ecology and how it has informed conservation

E. McCartney-Melstad and H. B. Shaffer

Molecular Ecology 24:5084-5109, 2015.

Published Work, Permalink

Desert Tortoises in the Genomic Age: Population Genetics and the Landscape

H. B. Shaffer, E. McCartney-Melstad, P. Ralph, G. Bradburd, E. Lundgren, J. Vu, B. Hagerty, F. Sandmeier, C. Weitzman, R. Tracy

2015.

Progress Report, Permalink

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Conservation genetics and genomics of amphibians and reptiles

H. B. Shaffer, M, Gidiş E. McCartney-Melstad, K. M. Neal, H. M. Oyamaguchi, M. Tellez, and E. M. Toffelmier

Annual Reviews of Animal Biosciences 3:113-138, 2015.

Published Work, Permalink

The advantages of going large: genome-wide SNPs clarify the complex population history and systematics of the threatened western pond turtle

P.Q. Spinks, R. C. Thomson, and H. B. Shaffer

Molecular Ecology 23:2228-2241, 2014.

Published Work, Permalink

Genomics in ecology, evolution and systematics

H. B. Shaffer and M. D. Purugganan

Annual Review of Ecology, Evolution and Systematics 44:1-4, 2013.

Published Work, Permalink

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage

H. B. Shaffer (and 58 coauthors)

Genome Biology 2013, 14:R28, 2013.

Published Work, Permalink

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